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How to manage secrets with worktrees: Files that are untracked in Git will NOT be copied over to new worktrees (Codex, Claude Code, & Conductor included) Claude Code introduced .worktreeinclude, which uses glob syntax to copy untracked files into new directories - these can be .env files, secrets, or anything else you don't want in Git (s/o @ClaudeDevs) Here's how to get started: 1. Add .worktreeinclude to your project 2. Specify which files to copy (same syntax as .gitignore) 3. New worktrees will have these files copied over automatically @conductor_build supports .worktreeinclude for Claude AND Codex - one config, two harnesses! We also have a setting called "files to copy" if you don't like random dotfiles cluttering up your projects :) Here's how you can use "files to copy" and .worktreeinclude to worktreemax